Per­cep­tion of time and tem­po­ral change are crit­i­cal for human cog­ni­tion. Yet, per­cep­tion of tem­po­ral change is sus­cep­ti­ble to con­tex­tu­al influ­ences such as changes of a sound’s pitch. Using func­tion­al mag­net­ic res­o­nance imag­ing (fMRI), the cur­rent study aimed to inves­ti­gate per­cep­tion of tem­po­ral rate change and pitch-induced illu­so­ry dis­tor­tions. In a 6 × 6 design, human par­tic­i­pants (N=19) lis­tened to fre­quen­cy-mod­u­lat­ed sounds (~4 Hz) that var­ied over time in both mod­u­la­tion rate and pitch. Par­tic­i­pants judged the direc­tion of rate change (‘speed­ing up’ vs. ‘slow­ing down’), while ignor­ing changes in pitch. Behav­ioral­ly, rate judg­ments were strong­ly biased by pitch changes: Par­tic­i­pants per­ceived rate to slow down when pitch decreased and to speed up when pitch increased (‘rate-change illu­sion’). The fMRI data revealed acti­va­tion increas­es with increas­ing task dif­fi­cul­ty in pre-SMA, left puta­men, and right IFG/insula. Impor­tant­ly, acti­va­tion in pre-SMA was linked to the per­cep­tu­al sen­si­tiv­i­ty to dis­crim­i­nate rate changes and, togeth­er with the left puta­men, to rel­a­tive reduc­tions in sus­cep­ti­bil­i­ty to pitch-induced illu­so­ry dis­tor­tions. Right IFG/insula acti­va­tions, how­ev­er, only scaled with task dif­fi­cul­ty. These data offer a dis­tinc­tion between regions whose acti­va­tions scale with per­cep­tu­al sen­si­tiv­i­ty to fea­tures of time (pre-SMA) and those that more gen­er­al­ly sup­port behav­ing in dif­fi­cult lis­ten­ing con­di­tions (IFG/insula). Hence, the data under­score that indi­vid­ual dif­fer­ences in time per­cep­tion can be relat­ed to dif­fer­ent pat­terns of neu­ro­func­tion­al activation.